Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
77
total RNA-seq
ATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
2
pCHi-C
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
79
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
53
February, 2021
24
August, 2021
March, 2020
5
February, 2023
5
January, 2019
5
October, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
78
tsv
71
bigWig
70
bam
7
fastq
3
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
hic
1
txt
1
vcf
Organism
95
Homo sapiens
Biosample type
1571
tissue
367
primary cell
144
in vitro differentiated cells
98
cell line
3
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
epithelium
43
pancreas
22
liver
8
embryo
7
kidney
Project
91
AMP
5
T1D
2
community
Genome assembly (visualization)
72
hg19
71
GRCh38
Lab
75
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
ChIP-seq
month_released!
March, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
98 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
pCHi-C
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
2
2
2
1
1
H1-hESC
8
EndoC_BH1
3
2
EndoC-BH1
1
1
+ See 7 more…
See all biosamples
Download