Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
ChIP-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
207
DNA accessibility
72
Transcription
Date released
187
June, 2019
89
February, 2021
57
August, 2021
9
November, 2018
7
May, 2022
7
October, 2019
4
February, 2023
2
August, 2017
1
November, 2020
1
October, 2022
Available data
1643
bigWig
1639
bam
1586
tsv
440
fastq
216
bed bed3+
214
bed narrowPeak
214
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
363
Homo sapiens
Biosample type
333
tissue
28
primary cell
2
cell line
1
in vitro differentiated cells
Organ
140
kidney
88
bone element
36
limb
34
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
13
pancreas
11
vasculature
9
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
4
skeleton
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
364
AMP
Genome assembly (visualization)
205
GRCh38
184
hg19
Lab
301
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
6
audit script error
assay_title!
ATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
364 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
13
49
13
heart
18
muscle of arm
17
brain
14
+ See 46 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 18 more…
cell line
MIN6
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download