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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
685
February, 2021
200
August, 2021
200
May, 2021
191
May, 2020
187
June, 2019
168
July, 2018
110
August, 2017
103
May, 2022
102
February, 2023
102
July, 2019
57
March, 2020
56
September, 2020
50
October, 2019
49
April, 2018
47
September, 2023
27
September, 2018
25
February, 2020
22
November, 2019
19
April, 2020
18
November, 2018
16
January, 2021
15
February, 2018
15
November, 2020
10
December, 2019
5
January, 2018
5
January, 2019
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
March, 2019
Available data
123
tsv
57
txt
15
bam
15
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
199
Homo sapiens
Biosample type
165
tissue
26
cell line
9
in vitro differentiated cells
Organ
92
heart
66
kidney
13
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
200
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
116
AMP-T2D consortium
64
Katalin Susztak, Upenn
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
ChIP-seq
lab.title!
Karen Mohlke, UNC
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
200 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
adipocyte
1
osteoblast
1
See all biosamples
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