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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
6
DNA methylation
1
DNA accessibility
Date released
386
February, 2021
12
July, 2019
6
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
Available data
401
bam
401
bigWig
401
tsv
4
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
410
Homo sapiens
Biosample type
408
tissue
2
primary cell
1
in vitro differentiated cells
Organ
569
pancreas
505
connective tissue
411
adipose tissue
292
epithelium
227
kidney
212
heart
212
liver
147
bone element
88
vasculature
85
blood vessel
62
artery
62
brain
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
411
AMP
Genome assembly (visualization)
402
GRCh38
400
hg19
Lab
411
AMP-T2D consortium
assay_title!
ATAC-seq
ChIP-seq
month_released!
November, 2018
target.investigated_as!
other context
BIOSAMPLE
ASSAY
411 results
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total RNA-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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