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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
ATAC-seq
1
snATAC-seq
Assay category
34
DNA accessibility
27
DNA binding
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
6
May, 2019
5
July, 2019
4
March, 2020
1
May, 2022
Available data
66
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
72
Homo sapiens
Biosample type
60
tissue
12
primary cell
Organ
602
liver
585
pancreas
564
connective tissue
420
adipose tissue
272
epithelium
176
heart
162
brain
153
vasculature
147
blood vessel
128
kidney
88
limb
83
artery
72
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
16
vein
13
spleen
7
eye
2
pericardium
1
pituitary gland
Project
72
AMP
Genome assembly (visualization)
72
hg19
53
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
FAIRE-seq
organ_slims!
skeleton
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
skeletal muscle tissue
13
1
2
1
1
muscle of arm
17
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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