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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
164
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
436
Transcription
164
DNA binding
87
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
141
May, 2021
95
May, 2022
76
February, 2023
56
September, 2020
48
July, 2018
47
February, 2021
47
May, 2020
44
June, 2019
44
September, 2018
43
April, 2018
34
August, 2017
31
July, 2019
22
October, 2019
8
January, 2021
6
November, 2017
5
December, 2019
5
November, 2020
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
422
bigWig
421
bam
337
fastq
258
tsv
151
bed narrowPeak
114
zippedFastqFolder
60
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
772
Homo sapiens
Biosample type
2189
tissue
772
primary cell
614
cell line
297
in vitro differentiated cells
9
stem cell
Organ
298
epithelium
244
pancreas
33
connective tissue
31
kidney
28
vasculature
23
blood vessel
18
brain
15
vein
11
heart
11
liver
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
332
AMP
275
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
431
hg19
385
GRCh38
Lab
307
AMP-T2D consortium
275
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
FAIRE-seq
organ_slims!
pituitary gland
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
772 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
9
31
1
monocyte
54
44
1
1
pancreatic beta cell
21
12
9
16
1
exocrine cell
39
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