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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
4
ChIP-seq
Assay category
7
Transcription
4
DNA binding
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
6
July, 2018
4
December, 2017
1
June, 2018
Available data
197
bam
185
bigWig
143
tsv
84
txt
51
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
5
hic
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
Organism
11
Homo sapiens
Biosample type
7
primary cell
4
in vitro differentiated cells
Organ
5
epithelium
5
pancreas
4
embryo
Project
11
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
11
AMP-T2D consortium
Audit category:
28
inconsistent control
11
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
ATAC-seq
GRO-seq
award.project!
HPAP
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
ChIP-seq
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
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