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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
89
ChIP-seq
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
89
DNA binding
28
DNA accessibility
7
DNA methylation
Target of assay
68
histone
68
histone modification
35
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
59
September, 2018
50
August, 2017
48
July, 2018
45
February, 2021
38
April, 2018
38
September, 2020
9
November, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
530
bigWig
520
bam
372
fastq
258
tsv
251
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
372
Homo sapiens
Biosample type
401
cell line
372
primary cell
342
tissue
120
in vitro differentiated cells
1
stem cell
Organ
222
pancreas
202
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
213
AMP
159
HPAP
Genome assembly (visualization)
199
hg19
192
GRCh38
Lab
213
AMP-T2D consortium
159
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
GRO-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
372 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
11
6
Langerhans cell
34
27
pancreatic beta cell
12
21
11
exocrine cell
39
pancreatic ductal cell
9
4
13
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