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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
165
ChIP-seq
ATAC-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
1
DNAme array
Assay category
191
Transcription
165
DNA binding
10
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
287
October, 2019
241
May, 2020
240
August, 2021
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
100
February, 2023
94
December, 2017
94
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
59
September, 2018
56
September, 2020
50
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
33
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
4
August, 2018
4
March, 2023
4
May, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
298
bigWig
264
bam
173
tsv
120
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
383
Homo sapiens
Biosample type
193
primary cell
127
in vitro differentiated cells
59
tissue
5
cell line
Organ
45
pancreas
19
lung
10
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
212
AMP
153
T1D
19
LungMap
Genome assembly (visualization)
298
hg19
263
GRCh38
Lab
230
Kyle Gaulton, UCSD
135
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
74
inconsistent ontology term
assay_title!
ATAC-seq
Hi-C
HiChIP
BIOSAMPLE
ASSAY
384 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
single cell RNA-seq
DNAme array
primary cell
monocyte
52
85
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
36
lung
10
9
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 1 more…
cell line
EndoC_BH1
4
1
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