Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
104
total RNA-seq
ATAC-seq
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
407
DNA binding
104
Transcription
2
DNA accessibility
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
84
February, 2021
54
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
19
October, 2019
12
November, 2019
5
March, 2020
5
May, 2021
Available data
513
bigWig
499
bam
390
bed narrowPeak
367
fastq
351
bigBed narrowPeak
104
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
tar
2
bed bed3+
Organism
514
Homo sapiens
Biosample type
1622
tissue
535
primary cell
514
cell line
251
in vitro differentiated cells
3
stem cell
Organ
328
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
53
pancreas
48
epithelium
12
kidney
8
embryo
Project
510
AMP
4
T1D
Genome assembly (visualization)
514
hg19
453
GRCh38
Lab
500
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
Hi-C
month_released!
January, 2021
BIOSAMPLE
ASSAY
514 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
cell line
HepG2
322
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
+ See 7 more…
See all biosamples
Download