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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
1
DNA accessibility
Date released
7
May, 2022
5
February, 2021
4
February, 2023
1
October, 2022
Available data
3217
bam
3033
bigWig
1584
tsv
1539
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
17
txt
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
16
tissue
1
cell line
Organ
6
pancreas
5
kidney
4
bone element
4
skeleton
1
musculature of body
Project
17
AMP
Genome assembly (visualization)
1
hg19
Lab
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
6
audit script error
assay_title!
ATAC-seq
RNA microarray
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
17 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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