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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
35
total RNA-seq
15
RRBS
15
small RNA-seq
12
WGBS
8
Hi-C
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
53
Transcription
27
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
406
November, 2017
365
May, 2021
350
August, 2017
292
October, 2019
242
August, 2021
241
May, 2020
223
February, 2021
217
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
59
March, 2020
59
September, 2018
56
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
8
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
May, 2023
1
August, 2022
1
March, 2019
Available data
184
bam
164
bigWig
99
bed narrowPeak
99
bigBed narrowPeak
53
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
210
Homo sapiens
Biosample type
176
tissue
34
primary cell
Organ
60
vasculature
59
blood vessel
45
brain
42
heart
18
connective tissue
18
epithelium
17
musculature of body
16
kidney
adipose tissue
12
limb
10
liver
8
pancreas
7
artery
2
pericardium
1
eye
Project
210
AMP
Genome assembly (visualization)
171
hg19
157
GRCh38
Lab
210
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
RNA microarray
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 25 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 19 more…
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