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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
1
March, 2020
1
May, 2021
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
23
Homo sapiens
Biosample type
23
primary cell
Organ
792
pancreas
765
liver
658
connective tissue
485
adipose tissue
415
epithelium
344
heart
280
brain
275
kidney
189
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
90
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
1
T1D
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
ATAC-seq
RRBS
whole genome sequencing assay
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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