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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
23
total RNA-seq
9
Hi-C
RRBS
6
small RNA-seq
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
WGBS
1
snATAC-seq
Assay category
149
DNA binding
33
Transcription
9
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
115
histone
115
histone modification
91
narrow histone mark
37
control
24
broad histone mark
Date released
85
October, 2019
28
November, 2017
23
July, 2019
22
August, 2017
14
February, 2020
9
October, 2017
7
March, 2020
4
May, 2019
2
June, 2019
2
May, 2022
Available data
298
bam
287
bigWig
263
bed narrowPeak
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
20
fastq
3
hdf5
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
1
txt
Organism
196
Homo sapiens
Biosample type
183
tissue
13
primary cell
Organ
723
pancreas
634
connective tissue
477
adipose tissue
409
liver
361
epithelium
250
heart
171
kidney
153
brain
147
bone element
106
vasculature
105
blood vessel
71
artery
43
musculature of body
37
embryo
30
limb
26
eye
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
118
hg19
96
GRCh38
Lab
196
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
RRBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
brain
14
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
+ See 75 more…
primary cell
skeletal muscle satellite cell
1
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 3 more…
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