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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
712
ChIP-seq
ATAC-seq
174
DNase-seq
92
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
WGBS
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
1
pCHi-C
Assay category
712
DNA binding
206
DNA accessibility
163
Transcription
15
3D chromatin structure
11
DNA methylation
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
October, 2019
184
August, 2017
163
June, 2019
115
May, 2019
85
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
66
August, 2021
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
28
May, 2022
20
November, 2018
19
April, 2020
15
October, 2017
12
February, 2023
12
July, 2019
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2018
4
May, 2023
4
November, 2020
2
May, 2021
1
August, 2022
1
December, 2019
1
March, 2019
1
November, 2019
Available data
1642
bam
1556
bigWig
tsv
627
bed narrowPeak
512
bigBed narrowPeak
338
fastq
207
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
6
csv
1
bedpe
Organism
1188
Homo sapiens
Biosample type
1197
tissue
559
primary cell
488
cell line
219
in vitro differentiated cells
6
stem cell
Organ
208
kidney
177
liver
165
pancreas
154
brain
149
heart
88
bone element
77
adipose tissue
77
connective tissue
73
musculature of body
54
blood vessel
54
vasculature
43
limb
21
spleen
19
lung
18
ureter
7
artery
4
skeleton
3
eye
1
pericardium
1
thymus
Project
1111
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
617
GRCh38
564
hg19
Lab
975
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
WGBS
files.file_type!
tsv
month_released!
October, 2019
BIOSAMPLE
ASSAY
1197 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
pCHi-C
tissue
liver
140
2
20
1
1
1
kidney
23
13
49
59
6
1
1
1
bone element
84
islet of Langerhans
50
1
17
7
3
1
1
4
left cardiac atrium
40
1
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