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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
ATAC-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
33
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
Available data
55
bigWig
51
bed narrowPeak
45
bed broadPeak
43
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
80
tissue
14
primary cell
Organ
534
connective tissue
476
adipose tissue
439
pancreas
330
liver
258
heart
220
kidney
176
brain
146
bone element
80
musculature of body
68
blood vessel
68
vasculature
46
limb
22
spleen
20
lung
18
ureter
11
artery
8
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
60
hg19
41
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ATAC-seq
WGBS
month_released!
October, 2019
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
13
7
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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