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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
34
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
25
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
92
bam
83
bigWig
58
tsv
29
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
58
cell line
36
tissue
2
primary cell
Organ
763
liver
743
pancreas
653
connective tissue
479
adipose tissue
374
epithelium
338
heart
282
brain
279
kidney
188
vasculature
182
blood vessel
147
bone element
113
limb
96
artery
94
musculature of body
68
blood
68
bodily fluid
42
nerve
36
embryo
33
eye
22
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
96
AMP-T2D consortium
assay_title!
ATAC-seq
WGBS
files.file_type!
xls
month_released!
January, 2018
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
2
coronary artery
1
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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