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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
pCHi-C
Assay category
39
DNA binding
33
DNA accessibility
8
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
4
March, 2020
2
February, 2020
May, 2022
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
92
Homo sapiens
Biosample type
78
tissue
14
primary cell
Organ
745
liver
744
pancreas
654
connective tissue
483
adipose tissue
380
epithelium
343
heart
280
brain
277
kidney
189
vasculature
183
blood vessel
146
bone element
114
limb
96
artery
92
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
29
eye
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
1
pituitary gland
1
spinal cord
Project
92
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
ATAC-seq
pCHi-C
audit.WARNING.category!
inconsistent assembly
month_released!
May, 2022
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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