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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
2
November, 2018
Available data
241
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
259
tissue
21
primary cell
Organ
791
pancreas
765
liver
654
connective tissue
483
adipose tissue
421
epithelium
343
heart
280
brain
277
kidney
189
vasculature
183
blood vessel
146
bone element
114
limb
96
artery
94
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
29
eye
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
1
pituitary gland
1
spinal cord
Project
280
AMP
Genome assembly (visualization)
215
GRCh38
163
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
pCHi-C
audit.WARNING.category!
inconsistent assembly
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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