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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
ATAC-seq
47
WGBS
pCHi-C
4
ChIP-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
76
DNA accessibility
47
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
95
May, 2022
88
February, 2023
56
September, 2020
52
May, 2021
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
March, 2020
5
March, 2023
3
October, 2022
Available data
186
bam
186
bigWig
159
fastq
114
zippedFastqFolder
104
tsv
88
bed narrowPeak
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
473
Homo sapiens
Biosample type
380
primary cell
85
tissue
11
cell line
2
stem cell
Organ
126
pancreas
107
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
275
HPAP
132
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
105
hg19
103
GRCh38
Lab
275
Klaus Kaestner, Upenn
124
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
8
inconsistent ontology term
assay_title!
ATAC-seq
pCHi-C
award.project!
AMP
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
monocyte
53
exocrine cell
39
pancreatic beta cell
11
16
1
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tissue
kidney
47
lung
9
10
islet of Langerhans
7
6
2
pancreas
4
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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