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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
99
total RNA-seq
76
snATAC-seq
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
103
Transcription
76
DNA accessibility
47
DNA methylation
Date released
88
February, 2023
62
May, 2022
33
February, 2021
17
May, 2021
16
January, 2021
16
September, 2020
10
April, 2020
4
March, 2023
2
March, 2020
Available data
125
fastq
62
zippedFastqFolder
6
tsv
bedpe bed3+
3
cool
3
hic
Organism
243
Homo sapiens
Biosample type
211
primary cell
28
tissue
7
cell line
2
stem cell
Organ
117
pancreas
100
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
187
HPAP
47
T1D
10
LungMap
4
community
Genome assembly (visualization)
GRCh38
186
hg19
Lab
187
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
assay_title!
ATAC-seq
single cell RNA-seq
assembly!
GRCh38
award.project!
AMP
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
248 results
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Clear Filters
total RNA-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
31
Langerhans cell
48
exocrine cell
39
pancreatic beta cell
11
16
peripheral blood mononuclear cell
8
+ See 15 more…
tissue
islet of Langerhans
7
6
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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