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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
19
RRBS
17
WGBS
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
59
Transcription
36
DNA methylation
1
DNA accessibility
Date released
84
February, 2021
49
August, 2021
23
July, 2019
7
May, 2022
7
November, 2018
6
August, 2017
4
February, 2023
1
October, 2022
Available data
3108
bam
2923
bigWig
1536
bed narrowPeak
1375
tsv
1160
fastq
1012
bigBed narrowPeak
396
tagAlign
318
bed broadPeak
284
bigBed broadPeak
268
bed bed3+
145
txt
62
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
180
Homo sapiens
Biosample type
169
tissue
10
primary cell
2
cell line
Organ
88
bone element
53
kidney
12
pancreas
8
heart
6
epithelium
5
musculature of body
4
skeleton
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
181
AMP
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
126
AMP-T2D consortium
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
single cell RNA-seq
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
181 results
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Clear Filters
RNA microarray
total RNA-seq
RRBS
WGBS
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
islet of Langerhans
6
1
heart left ventricle
1
2
pancreas
1
2
+ See 16 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
MIN6
1
See all biosamples
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