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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
ATAC-seq
single cell RNA-seq
122
total RNA-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
15
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
242
DNA binding
122
Transcription
29
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
160
control
83
histone
83
histone modification
50
broad histone mark
33
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
106
August, 2017
87
February, 2021
October, 2019
59
August, 2021
29
March, 2020
29
October, 2018
27
May, 2022
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
15
April, 2019
15
February, 2023
14
July, 2019
12
December, 2017
10
April, 2020
9
October, 2017
8
January, 2021
6
September, 2017
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
2
December, 2019
2
May, 2021
1
August, 2022
1
January, 2019
1
March, 2019
1
May, 2023
1
November, 2019
Available data
1653
bam
bigWig
958
tsv
627
bed narrowPeak
512
bigBed narrowPeak
342
fastq
207
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
144
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
1
bedpe
Organism
542
Homo sapiens
Biosample type
545
tissue
257
primary cell
104
cell line
101
in vitro differentiated cells
7
stem cell
Organ
95
liver
88
bone element
77
pancreas
67
kidney
63
adipose tissue
63
connective tissue
52
brain
27
heart
24
musculature of body
17
blood vessel
17
vasculature
11
lung
9
spleen
8
limb
5
eye
4
artery
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
517
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
24
hg19
5
GRCh38
Lab
429
AMP-T2D consortium
56
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
single cell RNA-seq
files.file_type!
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
545 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
liver
63
20
1
1
1
3
bone element
84
kidney
5
49
6
1
1
islet of Langerhans
21
18
7
3
1
4
subcutaneous abdominal adipose tissue
35
3
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