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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
97
total RNA-seq
ATAC-seq
10
DNase-seq
10
WGBS
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
205
DNA binding
97
Transcription
13
DNA methylation
12
DNA accessibility
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
171
August, 2017
47
October, 2018
46
December, 2017
26
November, 2018
9
October, 2017
7
December, 2018
7
January, 2019
6
May, 2022
6
September, 2017
2
July, 2018
Available data
1814
bam
1696
bigWig
966
tsv
750
bed narrowPeak
538
bigBed narrowPeak
327
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
144
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
320
Homo sapiens
Biosample type
364
cell line
327
tissue
244
primary cell
135
in vitro differentiated cells
4
stem cell
Organ
175
pancreas
80
liver
36
adipose tissue
36
connective tissue
23
spleen
11
brain
2
musculature of body
Project
327
AMP
Genome assembly (visualization)
249
GRCh38
246
hg19
Lab
321
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
single cell RNA-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
26
97
1
1
liver
66
2
1
1
body of pancreas
28
2
2
spleen
20
1
2
pancreas
15
2
1
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