Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
ATAC-seq
7
total RNA-seq
single cell RNA-seq
3
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
50
DNA binding
7
Transcription
3
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
22
broad histone mark
14
narrow histone mark
11
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
October, 2019
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
59
bam
47
bigWig
42
bed narrowPeak
42
bigBed narrowPeak
8
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
64
Homo sapiens
Biosample type
64
tissue
58
cell line
10
primary cell
Organ
540
connective tissue
482
adipose tissue
437
pancreas
333
liver
176
brain
173
heart
156
kidney
146
bone element
80
musculature of body
64
blood vessel
64
vasculature
47
limb
24
spleen
18
ureter
11
lung
9
artery
8
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
47
GRCh38
47
hg19
Lab
64
AMP-T2D consortium
assay_title!
ATAC-seq
single cell RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
64 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
ascending aorta
16
2
1
aorta
13
1
2
1
1
thoracic aorta
16
2
coronary artery
5
1
2
tibial artery
1
Download