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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
296
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
675
February, 2021
406
August, 2017
404
November, 2017
365
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
137
August, 2021
120
July, 2018
120
May, 2019
101
February, 2023
99
July, 2019
94
December, 2017
89
May, 2022
84
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
58
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
16
January, 2021
16
September, 2020
15
November, 2020
15
October, 2017
10
April, 2020
7
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
March, 2019
1
May, 2023
Available data
282
fastq
277
bam
267
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
37
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
399
Homo sapiens
Biosample type
282
tissue
68
in vitro differentiated cells
56
primary cell
Organ
185
pancreas
124
connective tissue
56
adipose tissue
53
liver
26
epithelium
26
musculature of body
Project
406
AMP
Genome assembly (visualization)
271
hg19
244
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
single cell RNA-seq
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
406 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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