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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
33
DNA accessibility
31
DNA binding
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
14
July, 2019
12
February, 2020
8
October, 2019
3
May, 2019
3
October, 2017
2
March, 2020
2
November, 2018
Available data
72
bam
51
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
23
tsv
19
tagAlign
10
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
92
Homo sapiens
Biosample type
77
tissue
15
primary cell
Organ
662
liver
577
connective tissue
563
pancreas
453
adipose tissue
258
epithelium
185
kidney
156
heart
147
bone element
113
vasculature
108
blood vessel
92
brain
74
artery
67
blood
67
bodily fluid
65
limb
61
musculature of body
30
eye
25
embryo
18
nerve
18
ureter
15
spleen
11
lung
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
44
GRCh38
43
hg19
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
single cell RNA-seq
target.investigated_as!
histone modification
other context
BIOSAMPLE
ASSAY
92 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 27 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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