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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
pCHi-C
4
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
19
Transcription
4
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
20
October, 2019
6
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
March, 2020
Available data
6
bam
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
29
tissue
4
primary cell
Organ
695
pancreas
615
connective tissue
468
adipose tissue
429
liver
342
epithelium
276
brain
236
heart
205
kidney
175
vasculature
170
blood vessel
147
bone element
114
limb
94
musculature of body
89
artery
42
nerve
34
embryo
32
eye
22
vein
18
spleen
18
ureter
17
blood
17
bodily fluid
11
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
33
AMP-T2D consortium
assay_title!
ATAC-seq
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans
14
4
2
retina
3
3
pigmented layer of retina
2
small intestine
1
primary cell
retinal pigment epithelial cell
2
1
1
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