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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
ATAC-seq
27
DNase-seq
small RNA-seq
1
Hi-C
Assay category
250
Transcription
207
DNA binding
27
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
39
August, 2017
20
October, 2019
16
July, 2019
6
November, 2017
5
December, 2019
5
November, 2020
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
1
March, 2023
Available data
484
bam
484
bigWig
250
tsv
222
bed narrowPeak
197
fastq
98
tagAlign
83
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
hic
Organism
485
Homo sapiens
Biosample type
1682
tissue
485
primary cell
452
cell line
248
in vitro differentiated cells
3
stem cell
Organ
192
epithelium
160
pancreas
29
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
10
heart
10
liver
10
musculature of body
3
eye
2
artery
1
adipose tissue
1
pericardium
Project
304
AMP
180
T1D
1
ITG
Genome assembly (visualization)
542
hg19
485
GRCh38
Lab
304
AMP-T2D consortium
180
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
small RNA-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
485 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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