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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
ATAC-seq
20
total RNA-seq
15
ChIP-seq
2
Hi-C
Assay category
187
DNA accessibility
20
Transcription
15
DNA binding
2
3D chromatin structure
Target of assay
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
10
control
5
RNA binding protein
5
transcription factor
Date released
693
February, 2021
318
November, 2017
225
May, 2021
223
August, 2021
214
May, 2020
208
August, 2017
199
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
96
October, 2019
88
November, 2018
84
July, 2019
63
December, 2017
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
35
December, 2018
28
May, 2019
27
September, 2018
25
February, 2020
25
November, 2019
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
5
May, 2024
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
August, 2022
1
March, 2019
Available data
222
bam
212
bigWig
192
bed narrowPeak
191
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
20
tsv
2
bedpe bed3+
2
hic
Organism
224
Homo sapiens
Biosample type
183
tissue
36
primary cell
5
cell line
Organ
80
kidney
35
musculature of body
33
heart
32
limb
30
brain
29
pancreas
23
epithelium
18
ureter
10
connective tissue
7
vasculature
6
eye
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
224
AMP
Genome assembly (visualization)
212
GRCh38
191
hg19
Lab
224
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
assay_title!
ATAC-seq
small RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
224 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
1
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
cardiac fibroblast
3
3
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
retinal pigment epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 17 more…
cell line
EndoC_BH1
1
3
1
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