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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
117
total RNA-seq
ATAC-seq
11
DNase-seq
11
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
763
DNA binding
123
Transcription
14
DNA methylation
13
DNA accessibility
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
227
August, 2017
94
December, 2017
87
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
9
October, 2017
6
April, 2018
6
May, 2022
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
Available data
2692
bam
2498
bigWig
1325
tsv
1283
bed narrowPeak
928
bigBed narrowPeak
920
fastq
298
tagAlign
271
bed broadPeak
236
bigBed broadPeak
232
bed bed3+
158
txt
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
913
Homo sapiens
Biosample type
427
cell line
primary cell
348
tissue
141
in vitro differentiated cells
4
stem cell
Organ
464
liver
189
pancreas
96
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
23
spleen
19
epithelium
11
brain
2
musculature of body
Project
920
AMP
Genome assembly (visualization)
755
hg19
712
GRCh38
5
hg18
Lab
914
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
snDrop-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
920 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
97
1
6
1
liver
67
2
1
1
body of pancreas
33
2
2
spleen
20
1
2
pancreas
16
2
1
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in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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