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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
37
ChIP-seq
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
38
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
19
December, 2017
15
November, 2019
10
May, 2021
6
November, 2020
3
February, 2023
3
March, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
74
bam
68
bigWig
39
tsv
32
bed narrowPeak
19
fastq
15
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
86
Homo sapiens
Biosample type
primary cell
60
cell line
24
in vitro differentiated cells
3
tissue
Organ
755
liver
622
connective tissue
519
pancreas
483
adipose tissue
333
heart
261
brain
240
kidney
153
blood vessel
153
vasculature
146
bone element
114
limb
94
artery
87
epithelium
81
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
83
AMP
4
T1D
Genome assembly (visualization)
69
hg19
68
GRCh38
Lab
81
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
assay_title!
ATAC-seq
snDrop-seq
biosample_type!
primary cell
organ_slims!
stomach
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
33
15
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
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