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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
532
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
532
DNA binding
164
Transcription
7
DNA methylation
6
DNA accessibility
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
676
bam
585
bigWig
462
fastq
402
bed narrowPeak
355
bigBed narrowPeak
165
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
715
Homo sapiens
Biosample type
367
cell line
320
tissue
15
in vitro differentiated cells
13
primary cell
Organ
715
liver
656
connective tissue
656
pancreas
485
adipose tissue
312
epithelium
306
heart
282
brain
190
vasculature
184
blood vessel
160
kidney
146
bone element
114
limb
96
artery
95
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
33
eye
22
vein
21
spleen
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
715
AMP
Genome assembly (visualization)
585
hg19
526
GRCh38
Lab
715
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
snDrop-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
715 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
358
5
1
1
2
tissue
liver
145
147
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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