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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
56
total RNA-seq
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
14
control
8
transcription factor
4
RNA binding protein
Date released
58
February, 2021
50
May, 2019
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
117
bam
104
bigWig
63
tsv
50
bed narrowPeak
46
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
5
bed bed3+
3
fastq
2
bedpe bed3+
2
hic
Organism
129
Homo sapiens
Biosample type
65
tissue
58
cell line
6
primary cell
Organ
773
pancreas
752
liver
640
connective tissue
473
adipose tissue
374
epithelium
317
heart
235
kidney
180
brain
147
bone element
134
vasculature
129
blood vessel
85
musculature of body
69
artery
68
blood
68
bodily fluid
42
limb
37
embryo
24
spleen
20
lung
18
ureter
12
eye
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
129
AMP
Genome assembly (visualization)
105
hg19
103
GRCh38
Lab
129
AMP-T2D consortium
assay_title!
ATAC-seq
snDrop-seq
month_released!
July, 2019
October, 2019
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
coronary artery
5
1
2
pulmonary artery
2
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
brain microvascular endothelial cell
3
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
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