Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
total RNA-seq
1
snATAC-seq
Assay category
4
3D chromatin structure
1
DNA accessibility
Date released
4
July, 2019
2
August, 2021
2
February, 2021
1
May, 2022
Available data
363
bam
290
fastq
152
bigWig
152
tagAlign
147
tsv
115
bed narrowPeak
114
zippedFastqFolder
99
txt
41
bigBed narrowPeak
39
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
9
bed bed3+
8
csv
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
1
cell line
1
tissue
Organ
4
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
9
AMP
Genome assembly (visualization)
GRCh38
244
hg19
Lab
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
assay_title!
ATAC-seq
total RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
Hi-C
Capture-C
pCHi-C
snATAC-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
Download