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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
42
ChIP-seq
2
Hi-C
total RNA-seq
Assay category
42
DNA binding
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
3
October, 2019
1
March, 2023
Available data
1577
bigWig
bam
1398
bed narrowPeak
948
bigBed narrowPeak
770
fastq
279
bed broadPeak
265
bigBed broadPeak
256
bed bed3+
246
tagAlign
124
tsv
17
bed bedMethyl
17
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
44
Homo sapiens
Biosample type
42
tissue
1
cell line
1
primary cell
Organ
40
heart
2
brain
1
pancreas
Project
43
AMP
1
ITG
Genome assembly (visualization)
123
hg19
44
GRCh38
5
hg18
Lab
40
Patrick T. Ellinor, Broad
3
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
total RNA-seq
files.file_type!
bam
organ_slims!
nerve
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
tissue
left cardiac atrium
40
dorsal plus ventral thalamus
1
planum polare
1
cell line
Panc1
1
primary cell
chondrocytes
1
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