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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
ATAC-seq
7
ChIP-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
Assay category
7
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
5
March, 2020
4
December, 2017
3
May, 2021
2
December, 2019
2
October, 2019
Available data
7
bam
6
bedpe bed3+
5
bed narrowPeak
5
bigWig
4
fastq
4
hic
3
tagAlign
3
tsv
2
ibed
Organism
16
Homo sapiens
Biosample type
89
tissue
38
primary cell
37
cell line
16
in vitro differentiated cells
1
stem cell
Organ
4
embryo
4
epithelium
Project
16
AMP
Genome assembly (visualization)
11
hg19
5
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent control read length
assay_title!
ATAC-seq
total RNA-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
2
Hepatic endoderm
4
cardiomyocytes
3
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
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