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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
41
WGBS
3
Hi-C
Assay category
85
Transcription
48
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
95
May, 2022
40
September, 2020
39
February, 2021
3
October, 2022
Available data
114
zippedFastqFolder
67
fastq
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
177
Homo sapiens
Biosample type
177
primary cell
Organ
44
epithelium
44
pancreas
Project
177
HPAP
Genome assembly (visualization)
3
hg19
Lab
2059
AMP-T2D consortium
194
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
19
Xin Sun, UCSD
18
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
30
audit script error
assay_title!
ATAC-seq
total RNA-seq
audit.WARNING.category!
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
177 results
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single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
25
1
pancreatic beta cell
16
1
pancreatic acinar cell
1
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