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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
ATAC-seq
100
single cell RNA-seq
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
102
Transcription
32
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
56
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
38
May, 2021
32
September, 2018
30
October, 2019
18
July, 2019
9
November, 2017
5
May, 2019
4
August, 2021
3
August, 2018
3
June, 2018
1
February, 2021
1
March, 2020
1
November, 2020
Available data
299
bigWig
291
bam
190
fastq
172
bed narrowPeak
102
tsv
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
csv
2
hic
1
bedpe bed3+
1
tar
Organism
347
Homo sapiens
Biosample type
1401
tissue
511
cell line
347
primary cell
216
in vitro differentiated cells
8
stem cell
Organ
191
epithelium
144
pancreas
35
vasculature
30
kidney
29
blood vessel
26
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
8
liver
5
eye
1
adipose tissue
Project
347
AMP
183
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
305
hg19
252
GRCh38
Lab
314
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
total RNA-seq
files.file_type!
csv
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
pancreatic alpha cell
13
12
pancreatic beta cell
13
12
pancreatic ductal cell
13
10
pancreatic endocrine cell
23
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