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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
6
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
1
Transcription
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
13
December, 2017
9
August, 2021
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
November, 2018
Available data
519
bam
459
fastq
bigWig
418
bed narrowPeak
357
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
137
Homo sapiens
Biosample type
75
tissue
59
cell line
2
primary cell
1
in vitro differentiated cells
Organ
139
pancreas
137
liver
123
heart
99
epithelium
99
kidney
91
connective tissue
85
bone element
61
adipose tissue
50
brain
35
vasculature
34
blood vessel
26
musculature of body
22
limb
20
lung
14
blood
14
bodily fluid
11
artery
11
nerve
9
spleen
8
embryo
8
eye
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
129
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
total RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
137 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
3
1
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
2
2
2
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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