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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
ATAC-seq
27
ChIP-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
1
RRBS
Assay category
27
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
13
December, 2017
9
February, 2018
7
June, 2019
6
October, 2019
1
January, 2018
1
July, 2019
Available data
29
bam
23
fastq
21
bigWig
20
bed narrowPeak
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
23
in vitro differentiated cells
9
tissue
5
primary cell
Organ
579
liver
397
pancreas
290
epithelium
heart
265
brain
219
kidney
185
connective tissue
129
vasculature
123
blood vessel
107
limb
89
musculature of body
87
adipose tissue
85
bone element
68
blood
68
bodily fluid
40
artery
37
nerve
24
spleen
23
embryo
22
vein
20
lung
18
ureter
14
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
22
hg19
21
GRCh38
1
hg18
Lab
37
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
total RNA-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
DNase-seq
pCHi-C
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
islet of Langerhans
2
4
retina
3
primary cell
retinal pigment epithelial cell
3
1
1
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