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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
104
total RNA-seq
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
302
DNA binding
104
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
277
transcription factor
88
recombinant protein
55
RNA binding protein
24
chromatin remodeller
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
1
other context
1
other post-translational modification
Date released
173
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
19
October, 2019
12
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
454
bigWig
453
bam
348
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
409
Homo sapiens
Biosample type
1525
tissue
442
primary cell
409
cell line
247
in vitro differentiated cells
3
stem cell
Organ
223
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
53
pancreas
48
epithelium
12
kidney
8
embryo
Project
405
AMP
4
T1D
Genome assembly (visualization)
458
hg19
409
GRCh38
Lab
409
AMP-T2D consortium
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
11
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
whole genome sequencing assay
files.file_type!
bigBed broadPeak
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
409 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
217
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
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