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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
28
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
28
DNA binding
6
Transcription
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
25
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
34
bam
27
bigWig
25
bed narrowPeak
25
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
cell line
36
tissue
2
primary cell
Organ
699
pancreas
658
connective tissue
485
adipose tissue
368
liver
361
epithelium
288
heart
282
brain
260
kidney
146
bone element
132
vasculature
126
blood vessel
114
limb
95
musculature of body
42
nerve
38
artery
33
eye
29
embryo
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
38
AMP-T2D consortium
assay_title!
ATAC-seq
whole genome sequencing assay
biosample_type!
cell line
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
tibial artery
23
2
1
coronary artery
5
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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