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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
120
ChIP-seq
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
146
Transcription
120
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
292
October, 2019
242
August, 2021
218
June, 2019
196
May, 2020
168
July, 2018
135
May, 2021
120
May, 2019
117
May, 2022
102
July, 2019
94
December, 2017
90
February, 2023
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
280
bam
250
bigWig
144
tsv
100
bed narrowPeak
88
fastq
73
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
284
Homo sapiens
Biosample type
219
tissue
62
cell line
3
primary cell
Organ
247
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
284
AMP
Genome assembly (visualization)
241
GRCh38
241
hg19
Lab
284
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
whole genome sequencing assay
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
284 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
2
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
cell line
HepG2
45
1
1
GM12878
15
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
pancreatic cell
1
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