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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
ATAC-seq
3
FAIRE-seq
2
DNase-seq
Assay category
34
DNA binding
5
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
August, 2017
July, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
388
fastq
366
bam
186
tsv
158
txt
152
tagAlign
148
bigWig
114
zippedFastqFolder
113
bed narrowPeak
39
bed broadPeak
39
bigBed narrowPeak
23
bedpe bed3+
22
hic
18
bigBed broadPeak
8
csv
7
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
39
Homo sapiens
Biosample type
32
cell line
4
primary cell
3
tissue
Organ
32
liver
2
pancreas
1
blood vessel
1
epithelium
1
limb
1
musculature of body
1
vasculature
1
vein
Project
39
AMP
Genome assembly (visualization)
GRCh38
934
hg19
Lab
39
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assay_title!
ATAC-seq
assembly!
GRCh38
award.project!
T1D
month_released!
July, 2019
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
FAIRE-seq
DNase-seq
cell line
HepG2
32
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
muscle of leg
1
pancreas
1
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