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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
123
total RNA-seq
87
RNA microarray
ATAC-seq
24
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
297
Transcription
23
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
182
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
93
February, 2021
67
October, 2019
47
September, 2023
31
May, 2020
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
22
May, 2022
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
February, 2023
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
1
August, 2022
1
January, 2019
1
March, 2019
1
November, 2019
Available data
179
bam
158
tsv
151
txt
122
tagAlign
72
fastq
35
bed narrowPeak
35
bigWig
21
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
786
Homo sapiens
Biosample type
789
tissue
342
primary cell
168
cell line
62
in vitro differentiated cells
7
stem cell
Organ
134
kidney
122
heart
103
liver
88
bone element
64
connective tissue
63
adipose tissue
60
brain
57
pancreas
39
musculature of body
28
blood vessel
28
vasculature
26
limb
25
eye
20
lung
12
nerve
11
artery
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
721
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
GRCh38
1633
hg19
Lab
633
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2020
BIOSAMPLE
ASSAY
789 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
1
liver
70
1
20
1
1
1
3
bone element
84
islet of Langerhans
46
21
4
1
3
1
1
subcutaneous abdominal adipose tissue
36
3
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