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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
84
RNA microarray
34
total RNA-seq
ATAC-seq
4
Hi-C
4
WGBS
4
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
35
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
86
February, 2021
35
August, 2017
32
August, 2021
32
May, 2020
20
May, 2022
13
December, 2017
4
February, 2023
3
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2021
1
November, 2018
Available data
150
bam
122
fastq
88
txt
74
bigWig
55
tagAlign
54
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
329
Homo sapiens
Biosample type
191
tissue
133
cell line
4
primary cell
1
in vitro differentiated cells
Organ
240
liver
218
pancreas
161
epithelium
149
kidney
127
heart
98
connective tissue
89
bone element
67
brain
64
adipose tissue
45
vasculature
43
blood vessel
42
musculature of body
27
eye
26
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
1
T1D
Genome assembly (visualization)
660
hg19
GRCh38
Lab
277
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assay_title!
ATAC-seq
assembly!
GRCh38
organ_slims!
intestine
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
RNA microarray
total RNA-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
70
20
1
3
1
1
1
bone element
84
right lobe of liver
3
1
1
1
acetabular part of hip bone
1
ilium
1
+ See 2 more…
cell line
HepG2
117
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
megakaryocyte
1
in vitro differentiated cells
hepatocyte
1
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