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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
25
ChIP-seq
15
total RNA-seq
ATAC-seq
2
Capture-C
1
RNA microarray
Assay category
113
Transcription
25
DNA binding
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
648
February, 2021
365
August, 2017
336
November, 2017
283
October, 2019
196
May, 2020
168
July, 2018
141
August, 2021
135
May, 2021
120
May, 2019
102
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
49
April, 2018
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
14
February, 2023
12
October, 2017
10
December, 2019
6
September, 2017
4
August, 2018
4
November, 2020
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
113
tsv
39
bam
31
bigWig
24
tagAlign
16
bed narrowPeak
3
bed bed3+
Organism
140
Homo sapiens
Biosample type
99
tissue
28
in vitro differentiated cells
10
cell line
4
primary cell
Organ
92
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
liver
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
141
AMP
Genome assembly (visualization)
31
GRCh38
30
hg19
Lab
141
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
assembly!
hg18
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
141 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
Capture-C
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
21
7
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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