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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
174
single cell RNA-seq
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
309
Transcription
44
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
164
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
66
October, 2019
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
16
February, 2023
16
July, 2019
16
June, 2019
15
April, 2019
12
December, 2017
9
November, 2018
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
May, 2021
1
August, 2022
1
January, 2019
Available data
256
bam
158
tsv
156
txt
133
tagAlign
123
bigWig
108
bed narrowPeak
81
fastq
68
bigBed narrowPeak
16
bed bed3+
16
bed bedMethyl
16
bed broadPeak
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
881
Homo sapiens
Biosample type
884
tissue
344
primary cell
116
cell line
97
in vitro differentiated cells
7
stem cell
Organ
165
heart
132
kidney
119
brain
93
liver
88
bone element
76
pancreas
65
connective tissue
64
adipose tissue
28
blood vessel
28
vasculature
26
limb
25
eye
21
musculature of body
20
lung
12
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
800
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
1701
GRCh38
hg19
Lab
663
AMP-T2D consortium
66
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
hg19
files.file_type!
bedpe
BIOSAMPLE
ASSAY
884 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
6
islet of Langerhans
40
32
7
4
1
4
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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