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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
174
single cell RNA-seq
ATAC-seq
123
total RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
17
DNase-seq
17
snATAC-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
372
DNA binding
297
Transcription
34
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
164
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
66
October, 2019
47
September, 2023
35
May, 2024
29
October, 2018
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
21
May, 2022
19
April, 2020
16
July, 2019
16
June, 2019
14
April, 2019
12
December, 2017
9
February, 2023
9
November, 2018
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
1
August, 2022
1
January, 2019
Available data
249
bam
158
tsv
150
txt
133
tagAlign
118
bigWig
103
bed narrowPeak
75
fastq
68
bigBed narrowPeak
16
bed bed3+
16
bed bedMethyl
16
bed broadPeak
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
852
Homo sapiens
Biosample type
855
tissue
320
primary cell
108
cell line
55
in vitro differentiated cells
7
stem cell
Organ
160
heart
131
kidney
119
brain
93
liver
88
bone element
65
connective tissue
64
adipose tissue
54
pancreas
28
blood vessel
28
vasculature
26
limb
25
eye
21
musculature of body
20
lung
12
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
787
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
1674
GRCh38
hg19
Lab
662
AMP-T2D consortium
66
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
hg19
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
855 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
pCHi-C
DNase-seq
snATAC-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
6
64
49
6
liver
62
1
20
3
1
bone element
84
islet of Langerhans
40
21
4
1
1
4
left cardiac atrium
35
18
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